Mid-session expansion that was left dirty. Adds 3 main-thread phase
markers so the timeline answers 'which phase dominated' instead of
just 'how long total':
New attrs (all Optional[float], stamped lazily):
- _appcontroller_init_done_ts: set by mark_gui_run_started() on its
first call (post-init, pre-anything)
- _gui_run_started_ts: set by mark_gui_run_started() at the start of
App.run() (pre-imgui-bundle C++ init)
New property:
- cold_start_ts: reads sloppy._SLOPPY_COLD_START_TS so the timeline
covers from Python-start to first-frame, not just AppController-init
to first-frame (the gap is the main-thread module import chain)
New method:
- mark_gui_run_started(ts=None): called by App.run() before the
imgui bundle setup. Idempotent (safe to call multiple times).
Lazily captures _appcontroller_init_done_ts on first call.
startup_timeline() now exposes 4 new precomputed deltas:
- appcontroller_init_ms: init → AppController done
- gui_setup_ms: AppController done → gui_run_started (imgui init)
- first_render_ms: gui_run_started → first frame
- module_imports_ms: cold_start → init_start
- cold_start_to_first_frame_ms: full Python-start → first-frame
mark_first_frame_rendered() now also logs the 3-phase breakdown in
the stderr line, e.g.:
[startup] first frame at 1830.2ms after init [init=33ms,
gui_setup=0ms, first_render=1797ms] (rendered 6.5ms AFTER warmup done)
The leftover print(f'[startup] RunnerParams() init: ...') referenced
_t which was deleted when the block was converted to a
with startup_profiler.phase() context. Would have raised NameError
on the full native GUI path. Replaced with a comment; the phase()
above already logs the same info.
Replaces the buggy custom _t = time.time(); print instrumentation with
the proper StartupProfiler context manager.
Phases added to App.__init__:
- app_init_AppController
- app_init_history_perfmon
Phases added to App.run() (else branch = native GUI):
- theme_load_from_config
- imgui_bundle_import (the C++ extension import chokepoint)
- RunnerParams_init
Note: a leftover print(f'[startup] RunnerParams() init: ...') line in
App.run() still references a stale _t variable. Needs a follow-up
edit to remove (will raise NameError if reached on the full native
GUI path; silent on the webhost/headless paths).
Replaces ad-hoc print() timing with the proper StartupProfiler.phase()
context manager. The phases cover the actual chokepoints the user
wanted to measure (NOT src/* imports — those are benchmark_imports.py's
job):
- argv_parse: argparse setup
- defer_sugar: defer.sugar install
- web_host_imports: imgui_bundle + api_hooks
- gui_2_import_webhost: from src.gui_2 import App
- app_construct: App() instance creation
- hello_imgui_run: the C++ imgui bundle init (the actual bottleneck)
- headless_imports: from src.app_controller import AppController
- appcontroller_construct_headless: AppController() + warmup submit
- appcontroller_run: asyncio loop
- gui_2_main_import: from src.gui_2 import main
- main_call: the legacy main() entry
Combined with the existing StartupProfiler singleton, every phase now
emits [startup] <name>: <ms>ms to stderr in real time, so the user
can grep for chokepoints in a real uv run.
- startup_profiler: StartupProfiler = StartupProfiler() at module bottom
so sloppy.py can import it without circular imports.
- phase() context manager now writes a [startup] <name>: <ms>ms line to
stderr in its finally block. Live visibility of every measured phase.
The Critical Anti-Patterns list now has 2 new HARD rules:
1. NEVER run git restore / git checkout -- <file> / git reset without
EXPLICIT user permission in the same message. They destroyed
user in-progress src/* edits twice in one session (2026-06-07).
2. No giant edits: if manual-slop_edit_file new_string exceeds ~20 lines,
STOP and split it. Large blocks hide indentation bugs.
Also:
- Strengthened Session-Learned rule 4 to a HARD BAN
- Added rule 6 'Stop profiling the wrong thing' (don't re-benchmark
src/* imports; benchmark_imports.py is authoritative; the missing
metrics are on imgui_bundle init + hello_imgui.run() + first frame)
Captures the 5 patterns that burned the most time in the
startup_speedup_20260606 sub-track 4 work:
1. ALWAYS use manual-slop_edit_file, not custom scripts
(custom scripts fail silently on indent/EOL/whitespace drift)
2. The decorator-orphan pitfall
(inserting before 'def foo' leaves @property decorating YOUR new method)
3. ast.parse() is not enough
(semantic errors aren't caught; import + instantiate + call after every edit)
4. The git restore trap
(don't run git status/restore while a user is mid-conversation)
5. Small verified edits beat big scripts
(edit_workflow says 3-10 lines; if you write 200 lines of script, wrong tool)
Also adds 2 new anti-patterns to the Critical list in AGENTS.md and
3 new sections to conductor/edit_workflow.md (decorator-orphan,
ast.parse-not-enough, set_file_slice-is-literal).
Adds per-AppController startup timing instrumentation to answer
'did the warmup block the first frame?'
AppController.__init__ records _init_start_ts at entry (cold-start anchor).
WarmupManager.on_complete callback stamps _warmup_done_ts.
App.render_main_interface (gui_2.py) calls mark_first_frame_rendered()
on its first call, which stamps _first_frame_ts and logs the timeline.
New public API on AppController:
- init_start_ts (property): float
- warmup_done_ts (property): Optional[float]
- first_frame_ts (property): Optional[float]
- mark_first_frame_rendered(ts=None): idempotent; logs to stderr
- startup_timeline() -> dict with all timestamps + precomputed deltas:
warmup_ms, first_frame_after_init_ms, first_frame_after_warmup_ms
Stderr log on warmup done:
[startup] warmup done in 1186.2ms (first frame rendered Nms BEFORE/AFTER)
Stderr log on first frame:
[startup] first frame at Xms after init (warmup took Yms) (rendered Zms BEFORE/AFTER warmup done)
Hook API:
- GET /api/startup_timeline
- ApiHookClient.get_startup_timeline() -> dict
5 new tests in test_warmup_canaries.py covering all the new methods.
All 18 canary tests + 10 api_hooks tests + 6 gui_indicator tests pass.
Script scripts/apply_startup_timeline.py is included as a reference
for the multi-edit pattern (the proper MCP-equivalent tools will be
added later per the edit_workflow doc).
Per module: prints a one-line summary to stderr when the import
completes or fails:
[warmup 1] google.genai on controller-io_0 (id=18636): 1218.6ms
[warmup 2] anthropic on controller-io_1 (id=5500): 1148.3ms
[warmup 3] openai on controller-io_2 (id=34376): 1144.2ms
...
When the entire warmup completes, prints an aggregate:
[warmup done] 9 modules: 9 completed (sum of per-module elapsed: 3591.7ms)
If ANY canary ran on the main thread (main-thread-purity violation),
the per-module line is tagged with [MAIN-THREAD] AND a final WARNING
is printed:
[warmup WARNING] N module(s) loaded on the MAIN THREAD: google.genai
Default is log_to_stderr=True so production runs get the observability
for free. Tests opt out via WarmupManager(pool, log_to_stderr=False)
in the _build_warmup helper.
5 new tests (4 stderr logging + 1 quiet). All 13 canary tests pass.
Use case: 'did my heavy import run on the GUI thread when it shouldnt
have?' is now answered by grepping stderr for [warmup ...] [MAIN-THREAD]
lines. No hook server required.
Adds a canary record for each module submitted to the warmup, tracking:
canary_id, module, thread_name, thread_id, submit_ts, start_ts,
end_ts, elapsed_ms, status, error.
Surface:
- WarmupManager.canaries() returns list[dict] (defensive copy)
- AppController.warmup_canaries() returns list[dict] (delegation)
- GET /api/warmup_canaries Hook API endpoint
- ApiHookClient.get_warmup_canaries() returns list[dict]
Example: the warmup of google.genai records a 1187ms canary on
thread controller-io_0 with thread_id 50420, canary_id 1.
11 new tests (8 unit in test_warmup_canaries + 3 in test_api_hooks_warmup).
All pass; live_gui smoke test confirms endpoint returns real data.
Sub-track 2 of startup_speedup_20260606. Removes the top-level
'import tomli_w' from src/models.py and moves it inside save_config().
tomli_w (~30ms cold load) is now loaded only when the user saves
config, not on every src.models import.
This drops the audit violation count from 63 to 62.
Pydantic BaseModel (the other src/models.py violation) is left for
a future sub-track: deferring a class base requires a metaclass or
proxy pattern that's higher risk for the small (~50ms) saving.
3 new tests in tests/test_models_no_top_level_tomli_w.py:
- tomli_w NOT in sys.modules after import src.models
- save_config() still works (because tomli_w loads on-demand)
- save_config() actually triggers the import on first call
17 existing model tests pass (test_persona_models, test_bias_models,
test_context_presets_models, test_per_ticket_model, test_file_item_model).
Fixes the run_tests_batched.py hang that occurs after batch 4.
The original conftest (commit 52ea2693) stored _warmup_app_controller
at module scope for the entire pytest session. When pytest exits,
GC of the AppController triggers ThreadPoolExecutor.__del__ ->
shutdown(wait=True). If warmup hasn't fully completed by then, the
shutdown blocks indefinitely, causing the batched test runner to
hang at the subprocess.run boundary.
Fix: register an atexit handler that captures the _io_pool reference
directly (default argument) and shuts it down with wait=False. The
pool reference is captured by closure, surviving even after the
AppController is GC'd. shutdown() is idempotent so the subsequent
shutdown(wait=True) in __del__ is a no-op.
This is part of sub-track 4 (warmup notification) cleanup; the
conftest's wait_for_warmup behavior is preserved, only the
exit-hang is fixed.
Sub-track 4 of startup_speedup_20260606. Adds per-frame GUI feedback
during the AppController's background warmup:
- render_warmup_status_indicator(app): module-level render fn called
from render_main_interface. Shows 'Warming up... (N/M)' in warning
color while pending, 'Imports: K failed' in error color on failure,
or 'All imports ready (M modules)' in success color for 3 seconds
after completion. Hidden otherwise.
- _on_warmup_complete_callback(app, status): thread-safe callback
registered with controller.on_warmup_complete() in App._post_init.
Records timestamp + lock-protected toast list.
- App._post_init: registers the callback.
6 new tests in tests/test_gui_warmup_indicator.py:
- 2 importable-checks (function exists)
- 3 callback-logic tests (timestamp, failures, thread-safety)
- 1 live_gui smoke test (controller exposes warmup_status)
All additive; no breaking changes to existing content. Derived from gaps
observed during the 2026-06-06 planning session (5 tracks spec'd +
planned end-to-end).
**AGENTS.md (1 new section, 16 lines):**
- Compaction Recovery - explicit recovery path for a new agent
picking up mid-track (read the digest, check state.toml, run audits,
resume from next unchecked task). Cross-references the
workflow-level 'Compaction Recovery' section.
**conductor/workflow.md (6 new sections, 145 lines):**
- Planning Session Workflow - documents the brainstorming -> spec ->
plan flow used 5x this session; mandates spec approval before plan;
notes the plan is the only artifact the implementer reads.
- Track Dependencies and Execution Order - verify the blocked_by
chain in metadata.json before starting; topological sort gives the
recommended execution order (recorded in PLANNING_DIGEST).
- State.toml Template - canonical structure (meta / blocked_by /
blocks / phases / tasks / verification / track-specific) so future
tracks have a consistent shape.
- Per-Task Decision Protocol - small decisions (cosmetic) decide
yourself; large decisions (architectural) STOP and report; regressions
STOP and report. The boundary is 'does this require a new spec or
plan update?'.
- Documentation Refresh Protocol - after a track ships, identify
affected guides (grep for renamed/moved symbols), update them, add
new guides for new modules, add styleguides for new conventions.
The 'post-tracks documentation' pattern is repeatable; tracks that
only update code are incomplete.
- Audit Script Policy - whenever a track introduces a new convention
that can be statically checked, add an audit script in scripts/
with --help / --json / strict modes. The audit + CI gate pair is
the convention-enforcement mechanism; 3 existing audits
(audit_main_thread_imports, audit_weak_types, check_test_toml_paths)
are the precedent.
All sections reference existing project files (brainstorming skill,
writing-plans skill, audit scripts, tracks.md, the existing 5 new
tracks' spec.md files, PLANNING_DIGEST_20260606.md).
No code changes. Documentation only. ~160 lines total added.
Sub-track 3 of startup_speedup_20260606. Builds on the Phase 7 minimal
work at b464d1fe which only added warmup_status to /api/gui/diagnostics.
New dedicated endpoints:
- GET /api/warmup_status -> controller.warmup_status() (cheap, lock-guarded)
- GET /api/warmup_wait?timeout=N -> controller.wait_for_warmup(timeout)
then returns the final status. Default 30s.
Both callable from external clients via ApiHookClient.get_warmup_status()
and ApiHookClient.get_warmup_wait(timeout=30.0).
7 new tests in tests/test_api_hooks_warmup.py (5 unit + 2 live_gui).
All 7 pass.
Single-session planning digest that captures:
- The 5 tracks fully specced + planned (test_batching, qwen_llama_grok,
data_oriented_error_handling, data_structure_strengthening,
mcp_architecture_refactor)
- Cross-cutting design themes (data-oriented, audit-driven, per-track
commit + git note, out-of-scope-by-default)
- The audit + data foundation (scripts/audit_weak_types.py; 430 -> 60
finding; 0 strong patterns; 26 unique type strings; 86% concentrated
in 6 files)
- The dependency graph + recommended execution order
- Follow-up tracks already planned in spec §12.1 of each track
- Recommended future tracks (post-tracks documentation is the top pick)
- Risks, open questions, and a complete file index
This is the kind of reference document that:
- Future planners consult to understand the codebase's current state
- The implementing agent uses to coordinate across tracks
- The user reviews as a digest of the planning work
Written in the project's docs/reports/ directory alongside the existing
Phase 5 reports (PHASE5_STABILISATION_REPORT.md, MUTATION_MATRIX_PHASE5.md, etc.).
~25 tasks across 7 phases, each with explicit Red-Green-Refactor TDD steps:
- Phase 1 (1.1-1.5): Foundation. 3-layer security module (8 unit tests
returning Result[Path]); SubMCP Protocol + MCPController class (6 unit
tests). Controller added ALONGSIDE the existing 45 functions in
mcp_client.py (no removal yet).
- Phase 2 (2.1-2.4): Backward compat. git mv mcp_client.py to
mcp_client_legacy.py; create new mcp_client.py as a slim shim
re-exporting 45+ old symbols. 12 legacy shim tests verify the surface.
The 4 existing test files + src/app_controller.py:61 still work.
- Phase 3 (3.1-3.4): FileIOMCP extracted (9 tools, 10 unit tests).
- Phase 4 (4.1-4.4): PythonMCP extracted (14 tools, 14 unit tests).
- Phase 5 (5.1-5.5): CMCP, CppMCP, WebMCP, AnalysisMCP extracted
(4 sub-MCPs, 18 unit tests; pattern mirrors Phase 3/4).
- Phase 6 (6.1-6.3): ExternalMCP extracted from mcp_client_legacy.
Class name preserved (ExternalMCPManager).
- Phase 7 (7.1-7.5): Update dispatch() in the legacy shim to use the
new controller (inverted-dict O(1) lookup); update docs; manual
smoke test; archive the track.
Each sub-MCP follows the same template (class with name / description
/ tools / invoke; security check for path-taking tools; Result wrapping
in invoke(); delegation to legacy functions for the actual implementation).
The sub-MCPs are thin adapters in v1; a future track can move the
implementations into the sub-MCP files directly.
Self-review at the end maps every spec section to a task (no gaps),
confirms zero placeholders, and verifies type/method-name consistency
across phases (SubMCP Protocol, MCPController class, Result[str,
ErrorInfo], _resolve_and_check all defined in Phase 1; used
consistently across Phases 3-6).
Track + metadata + state + tracks.md registration for the 2,205-line
mcp_client.py split into a slim controller + 6 native sub-MCPs + 1
external sub-MCP.
Key design decisions (per user feedback):
- Naming convention: mcp_<type>.py for native MCPs (mcp_file_io.py,
mcp_python.py, mcp_c.py, mcp_cpp.py, mcp_web.py, mcp_analysis.py).
- ExternalMCPManager class name preserved (moves to mcp_external.py).
- Sub-MCP shape: class with name / description / tools / invoke().
- MCPController: holds ALL_SUB_MCPS list, inverted-dict tool lookup,
3-layer security (extracted to mcp_client_security.py), schema
aggregation.
- Each invoke() returns Result[str, ErrorInfo] (from
data_oriented_error_handling_20260606).
- Backward compat: mcp_client_legacy.py re-exports all 45+ old
symbols; the 4 existing test files + src/app_controller.py:61
direct call continue to work.
DSL future (per user notes on APL/K/Cosy): NOT in this track.
Documented in spec §12.1 as the mcp_dsl_20260606 follow-up.
Sub-MCP architecture is the natural unit to pair with a DSL emitter.
7 phases. ~22 task slots. New tests: 9 (one per sub-MCP + controller +
security + legacy). Modified tests: 4 (existing mcp_* tests must
pass unchanged).
Blocked by: data_oriented_error_handling_20260606, data_structure_strengthening_20260606.
Blocks: mcp_dsl_20260606 (future DSL track).
Phase 6 of startup_speedup_20260606 was partial: ~13 ad-hoc
threading.Thread spawns remained in src/app_controller.py and
2 in src/gui_2.py. This commit migrates all of them to
self.submit_io(...) (the shared _io_pool wrapper from Phase 2).
ZERO new threading.Thread() spawns in src/ (excluding the
5 domain-specific threads already exempt per spec):
- api_hooks.py:739 HookServer HTTP server (domain-specific)
- api_hooks.py:818 WebSocketServer (domain-specific)
- app_controller.py _loop_thread (asyncio event loop, DEDICATED)
- multi_agent_conductor.py WorkerPool (domain-specific)
- performance_monitor.py CPU monitor (continuous, domain-specific)
Sites migrated (15 total):
app_controller.py:
- 1289 _task in _sync_rag_engine
- 1480 _run in _rebuild_rag_index
- 2078-2079 do_fetch in _fetch_models (dropped stored ref)
- 2218-2219 queue_fallback in _run_event_loop
- 2229 _handle_request_event in _process_event_queue
- 2828-2833 _do_project_switch in _switch_project (stored as Future)
- 3455 worker in _handle_md_only
- 3477 worker in _handle_compress_discussion
- 3516 worker in _handle_generate_send
- 3784 _bg_task in _cb_plan_epic
- 3825 _bg_task in _cb_accept_tracks
- 3844 engine.run in _cb_start_track (track_id case)
- 3855 engine.run in _cb_start_track (reload case)
- 3866 _start_track_logic lambda in _cb_start_track (idx case)
- 3939 engine.run in _start_track_logic
gui_2.py:
- 1129 _stats_worker in _update_context_file_stats
- 3507 worker in _check_auto_refresh_context_preview
Stored-ref migration (Phase 6 partial work):
- self.models_thread (declared L960, assigned L2078):
No external readers. Dropped the declaration and the assignment;
replaced the .start() with self.submit_io(do_fetch).
- self._project_switch_thread (declared L868, assigned L2828):
Read by test_project_switch_persona_preset.py:21 for
.is_alive() polling. The test's _wait_for_switch helper now uses
the public is_project_stale() flag instead -- the Future from
submit_io isn't directly exposed, but the in_progress flag
already tracks lifecycle correctly. Dropped the declaration;
replaced the .start() with self.submit_io(self._do_project_switch, path).
Test impact:
- test_project_switch_persona_preset.py::_wait_for_switch:
Updated to poll ctrl.is_project_stale() instead of the
_project_switch_thread attribute. The new API is cleaner
(one public method instead of two coupled attributes) and
works with the io_pool background-thread model.
Effectiveness:
- Per-spawn cost: ~1-5ms saved (thread creation)
- 4 long-lived threads eliminated; all background work now shares
the 4-worker _io_pool
- When 4 long-lived threads were active simultaneously, the new
pool backpressure causes them to queue; future work can be
backpressured explicitly
TESTS: 19+39 = 58 tests touching migrated code paths all pass.
The 1 remaining failure (test_api_generate_blocked_while_stale:
'AppController' object has no attribute 'ui_global_preset_name')
is pre-existing and unrelated to this work (per the user's note
that they will address separately).
The google-genai library has a known circular-import bug in its
__init__.py chain:
google.genai/__init__.py:21: from .client import Client
-> from ._api_client import BaseApiClient
-> from .types import HttpOptions
When loaded fresh in a pytest process, the chain collides with
itself and leaves google.genai in a 'partially initialized' state.
Per the user spec (startup_speedup_20260606 spec.md:2.2 Layer 3):
"the app controller should post to test clients or the user
when its threads are warmed up with imports — that way the user
knows 'hey you have the ui first, but now you have all the
functionality.'"
This is exactly what the warmup notification system does.
Phase 2 (commit 1354679e) added the WarmupManager + _io_pool,
and the warmup list (state.toml) already includes 'google.genai'.
The AppController.__init__ submits the warmup jobs to the _io_pool
background thread. When the warmup completes, _warmup_done_event
is set and registered on_warmup_complete callbacks fire.
The previous conftest fix imported 'google.genai' DIRECTLY at
conftest module load. That bypassed the whole notification
mechanism. This commit fixes the oversight:
- Reverts the direct `import google.genai`
- Creates an AppController at conftest load time
- Calls `wait_for_warmup(timeout=60.0)` to block until the
background warmup completes
- google.genai ends up in sys.modules via the warmup's
`importlib.import_module` call (same end state, but now via
the documented mechanism)
The conftest's `from src.gui_2 import App` at line 27 is also
a heavy synchronous import chain that runs in-process. By the
time that line executes, the warmup is already in progress on
the _io_pool. The wait_for_warmup() call after that line ensures
the warmup completes before any test collects.
The AppController is session-scoped (one per pytest process).
If another fixture (e.g. live_gui) creates its own AppController
that also runs warmup, the second controller's wait_for_warmup
returns immediately because the modules are already in
sys.modules.
Cost: 60s timeout worst-case (typically completes in ~3s based on
the baseline measurement). One-time per pytest process.
Earlier alternatives I tried and rejected:
- Direct `import google.genai` in conftest: bypasses the
notification mechanism. User feedback: "you are falling back
to your jank."
- Source-level `genai = _require_warmed('google.genai')` + `.types`:
fails the same way (the library bug is in the PARENT's
__init__.py, not the leaf). The parent's __init__.py never
completes in a fresh process; once it's in the "partially
initialized" state in sys.modules, no caller pattern can fix it.
- Revert the conftest change and skip these tests: not viable,
the tests are real and important.
The conftest pre-warm workaround added earlier was a TEST INFRASTRUCTURE
patch that did not address the actual problem. The real issue is in the
lazy-import pattern: `_require_warmed("google.genai.types")` triggers
google-genai's broken __init__.py chain in fresh pytest processes.
Per the Phase 3 spec, the correct pattern is:
genai = _require_warmed("google.genai")
types = genai.types
The PARENT package import completes the chain once. Then `.types`
is just an attribute access on the loaded module. No new import
needed at the leaf.
ROOT CAUSE: google-genai's __init__.py does
from .client import Client -> from ._api_client import BaseApiClient
which transitively does `from .types import HttpOptions`. When
google.genai.types is being loaded for the first time, types.py
executes `from ._operations_converters import (...)`. If anything
in that chain triggers the parent __init__.py, the relative
`from .types import HttpOptions` re-resolves to a "partially
initialized" google.genai.types in sys.modules and raises ImportError.
By importing `google.genai` directly (the parent), the entire
__init__.py chain runs to completion BEFORE we ever look up `.types`.
Subsequent access is just attribute lookup, no import.
FIXES (7 sites in src/ai_client.py):
- _gemini_tool_declaration (L651)
- _send_anthropic (L1170)
- _send_gemini (L1422)
- run_tier4_analysis (L2360)
- run_tier4_patch_generation (L2410)
- run_subagent_summarization (L2568)
- run_discussion_compression (L2616)
All changed from `types = _require_warmed("google.genai.types")`
to:
genai = _require_warmed("google.genai")
types = genai.types
ALSO REMOVED:
- conftest.py pre-warm of google.genai (no longer needed; the
source-level fix handles fresh-process imports correctly)
- _require_warmed parent pre-import in module_loader.py (no longer
needed; the convention is to pass top-level package names)
ALSO KEPT (real bug fix from earlier):
- _ensure_gemini_client UnboundLocalError: moved Client() construction
inside the `if _gemini_client is None:` block so `creds` is in scope.
- test_discussion_compression.py: test now mocks _require_warmed
to return a fake requests module with .post() (Phase 3 removed
the top-level `import requests` from ai_client.py).
TESTS (44/44 pass, no conftest pre-warm needed):
- test_subagent_summarization.py: 3/3
- test_tool_access_exclusion.py: 4/4
- test_tier4_interceptor.py: 7/7 (incl. test_gemini_provider_passes_qa_callback_to_run_script)
- test_gui2_mcp.py: 1/1 (test_mcp_tool_call_is_dispatched)
- test_gui_updates.py: 3/3 (incl. test_telemetry_data_updates_correctly)
- test_headless_service.py: 11/11 (incl. test_generate_endpoint)
- test_project_switch_persona_preset.py: 9/9 (incl. test_api_generate_blocked_while_stale)
- test_discussion_compression.py: 4/4 (incl. test_discussion_compression_deepseek)
- test_ai_cache_tracking.py: 2/2 (incl. test_gemini_cache_tracking)
ARCHITECTURAL NOTE: This is the PROPER fix per the Phase 3 spec.
The earlier conftest pre-warm was a workaround that masked the
issue. The source-level fix is the correct solution and aligns with
how google-genai's __init__.py chain expects to be loaded.
OUT OF SCOPE (pre-existing failures, not regressions from this work):
- test_rag_phase4_*.py: live_gui tests that require the RAG system
to return content with specific search hits. Pre-existing.
- test_project_switch_persona_preset.py::test_api_generate_blocked_while_stale:
- was failing on `ui_global_preset_name` AttributeError, but
PASSES after this fix (the UnboundLocalError was masking the
actual test logic which now correctly reaches the 409 check).
Three test failures identified by the batched test suite, all rooted
in the Phase 3 lazy-import refactor of src/ai_client.py.
FIX 1: UnboundLocalError in _ensure_gemini_client
- _ensure_gemini_client had a latent bug: creds was assigned inside
`if _gemini_client is None:` but used on the next line. When the
client was already cached, the assignment was skipped and the next
line raised UnboundLocalError. Moved the Client() construction
inside the if block to match creds' scope.
- This affected test_ai_cache_tracking.py and (downstream)
test_gui_updates.py::test_telemetry_data_updates_correctly.
FIX 2: Phase 3 removed top-level `import requests` from ai_client.py.
- test_discussion_compression.py::test_discussion_compression_deepseek
did `patch("src.ai_client.requests.post", ...)` which no longer works.
- Updated the test to mock _require_warmed to return a fake requests
module with `.post()`, matching the new lazy-import pattern.
FIX 3: _require_warmed could not import dotted names like `google.genai.types`
- The google-genai library has a self-referential __init__.py that
does `from .client import Client` which transitively does
`from .types import HttpOptions`. Importing `google.genai.types`
FIRST (before the parent package is fully loaded) hit a "partially
initialized module" circular import.
- Enhanced _require_warmed to pre-import parent packages for dotted
names: walks `name.split(".")` and imports each parent (if not in
sys.modules) before the leaf import. O(n) extra imports per call
on first use; subsequent calls are O(1) sys.modules hit.
TESTS:
- test_ai_cache_tracking.py: 2/2 PASS
- test_discussion_compression.py: 4/4 PASS
- 29/29 PASS across the sampled test files that were failing
(test_subagent_summarization, test_tool_access_exclusion,
test_tier4_interceptor, test_gui2_mcp, test_gui_updates,
test_headless_service)
ARCHITECTURAL NOTE: The _require_warmed enhancement is a small
but important robustness fix. The google-genai library's
__init__.py chain is a known source of fragility; the parent-
pre-import pattern is the recommended workaround.
~22 tasks across 2 phases, each with explicit Red-Green-Refactor TDD steps:
- Phase 1 (1.1-1.12): Foundation. type_aliases.py (10 TypeAliases + 1
NamedTuple) with 8 unit tests. Mechanical replacement of 345 weak
sites in 6 files (ai_client 139, app_controller 86, models 51,
api_hook_client 32, project_manager 20, aggregate 17). Each file
has a per-substitution table for the mechanical replacement. Audit
script gains --strict mode + baseline file (CI gate). 4 audit tests.
- Phase 2 (2.1-2.10): FileItemsDiff NamedTuple integrated.
generate_type_registry.py (AST-based; 3 modes: default, --check,
--diff). Initial registry generated in docs/type_registry/ (8+ .md
files). 6 generator tests. Type aliases styleguide + product-guidelines
updates. Manual smoke test. Track archived.
The type registry generator uses --check mode for CI: it regenerates to
a temp dir and diffs against the committed registry; exit 1 if drift.
The agent's track-completion workflow is: regenerate -> review diff ->
commit. CI enforces --check on every PR.
Self-review at the end maps every spec section to a task (no gaps),
confirms zero placeholders, and verifies type/method-name consistency
across phases (all 10 aliases + FileItemsDiff defined in Task 1.2; used
consistently in Tasks 1.3-1.8 and Phase 2).
Per user feedback (2026-06-06): instead of a follow-up 'TypedDict
Migration' track, add a NEW deliverable: an auto-generated type registry
in docs/type_registry/ that captures the field information in docs form.
New files:
- scripts/generate_type_registry.py (NEW): AST-based tool that reads
src/ and writes per-source-file .md files with the fields of every
@dataclass, NamedTuple, TypeAlias, TypedDict. Has --check (CI mode,
exits 1 if registry would change) and --diff (dry run) modes.
- docs/type_registry/ (NEW, generated): index.md + per-source-file
references (type_aliases.md, ai_client.md, models.md, etc.).
- tests/test_generate_type_registry.py (NEW): verify the generator.
Architecture updates:
- Section 3.6 (NEW): Type Registry architecture with example output.
- Section 3.7 (NEW): Why per-source-file docs (locality of reference).
- Section 1.1 (NEW): 'Why docs over TypedDict' analysis (3 reasons:
lower upfront cost, better fit for AI workflow, auto-maintained).
- Goals table: registry added as a C (innovation) goal.
- Module layout: docs/type_registry/ and scripts/generate_type_registry.py
added to the new files list.
- Migration: Phase 2 now includes the registry generator + initial docs.
- Out of scope: TypedDict migration REMOVED; 'auto-typing the field
shape' added with the docs as the chosen approach.
- See Also: TypedDict follow-up REPLACED with 'Registry Maintenance &
CI Integration' (smaller scope, just wires the generator into CI).
The 'cost we eat' is the LLM reading 200-500 lines of markdown per
query. This is bounded and proportional to actual information need.
The upfront cost of designing TypedDict schemas for every type is
unbounded. Tradeoffs favor the docs approach for v1; TypedDict can
come later as a future track if desired.
Phase 8 of startup_speedup_20260606 track.
Part 1: app_controller.py cleanup
- Removed 'import requests' (was used in 2 places - lazy import added inside)
- Removed 'import tomli_w' (dead import; never referenced in app_controller)
- Migrated 2 threading.Thread spawns to use self.submit_io (the do_post
closures in _handle_approve_ask and _handle_reject_ask)
Part 2: Main thread purity enforcement test
- tests/test_main_thread_purity.py: 7 tests verify that the 6 refactored
files (ai_client, app_controller, commands, theme_2, markdown_helper,
gui_2) have ZERO top-level imports from the heavy denylist:
{google.genai, anthropic, openai, requests, google.genai.types,
fastapi, fastapi.security.api_key, src.command_palette,
src.theme_nerv, src.theme_nerv_fx, src.markdown_table, numpy,
tkinter, tomli_w}
This is the static enforcement (the runtime audit-hook test using
sys.addaudithook is a follow-up).
The test is RED before each refactor phase, GREEN after. If a future
commit re-introduces a heavy import in one of these files, the test
fails immediately in CI.
TESTS:
- 7/7 main thread purity tests PASS
- 15/15 log + app controller tests still PASS (no breakage from
removing requests/tomli_w imports)
Phase 7 of startup_speedup_20260606 track.
Added warmup status to the existing /api/gui/diagnostics endpoint
(Phase 7 minimal scope - dedicated /api/warmup_status endpoint and
GUI status indicator deferred to follow-up sub-track).
The diagnostics response now includes:
warmup: {
pending: [list of module names still being warmed],
completed: [list of module names successfully warmed],
failed: [list of module names that failed to warm]
}
External clients and tests can poll this endpoint to know when the
system is fully ready (all heavy modules loaded).
The endpoint gracefully handles missing controller (returns empty dict)
and exceptions (catches them, returns default empty state).
TESTS: 7 live_gui tests pass (test_hooks, test_live_workflow,
test_live_gui_integration_v2). No breakage from the new field.
NEXT: Phase 8 (runtime audit hook enforcement test) + Phase 9
(final verify + checkpoint).
Phase 6 (partial) of startup_speedup_20260606 track.
Added AppController.submit_io(fn, *args, **kwargs) as the public API
for submitting fire-and-forget background work. Returns a
concurrent.futures.Future for lifecycle tracking. The _io_pool is
the shared 4-worker pool from src/io_pool.py.
Migrated 2 ad-hoc threading.Thread spawns to use submit_io:
- _manual_prune_logs() spawn: manual log pruning (cb)
- _prune_old_logs() spawn: startup log pruning (startup)
Both were threading.Thread(target=fn, daemon=True).start() calls. The
spawn cost (~1-5ms per thread creation) is eliminated; both jobs now
share the 4-worker _io_pool.
REMAINING AD-HOC THREADS (documented in state.toml as follow-up):
- app_controller.py: ~13 more threading.Thread() spawns (models fetch,
project switch, fetch workers, post workers, MMA spawn workers, etc.)
- gui_2.py: 2 spawns (stats worker, secondary worker)
- api_hooks.py: 2 spawns (HookServer and WebSocketServer threads - these
are domain-specific, NOT migrated per the spec exemption)
- multi_agent_conductor.py: 1 spawn (WorkerPool - domain-specific)
- performance_monitor.py: 1 spawn (CPU monitor - continuous sampling)
The remaining ad-hoc thread migrations could be a follow-up sub-track.
The architectural pattern is now established (submit_io); the migration
of the remaining cases is mechanical and lower-risk.
TESTS:
- tests/test_log_pruner.py, test_log_pruning_heuristic.py,
test_logging_e2e.py, test_app_controller_mcp.py,
test_app_controller_offloading.py,
test_app_controller_no_top_level_fastapi.py: 15/15 PASS
Track + metadata + state + tracks.md registration for the type-aliases
refactor that follows the audit_weak_types.py findings (430 weak sites
across 29 of 61 files; 86% concentrated in 6 high-traffic files).
Key design decisions (per user approval):
- 10 TypeAlias definitions in src/type_aliases.py (Metadata, CommsLogEntry,
CommsLog, HistoryMessage, History, FileItem, FileItems, ToolDefinition,
ToolCall, CommsLogCallback).
- 1 NamedTuple (FileItemsDiff) for the _reread_file_items return.
- Mechanical replacement of 345 weak sites across 6 files (NOT 430; the
remaining 85 are in 23 lower-impact files deferred to future tracks).
- scripts/audit_weak_types.py gains a --strict mode and a baseline file
(scripts/audit_weak_types.baseline.json) so the count is enforced.
- 2 phases: aliases + 6-file replacement + audit baseline; NamedTuples
+ docs + archive.
- Honest about what's missing: TypedDict / @dataclass migration is a
follow-up track (typed_dict_migration_20260606), not this one.
- Coexistence with the data_oriented_error_handling_20260606 track's
Result[T] / ErrorInfo: the aliases are value-level (data types), Result
is control-level (wrapper). They compose (Result[FileItems] is valid).
No conflict.
Audit baseline:
- Pre-track: 430 weak sites, 0 strong patterns
- Target after Phase 1: ~60 weak sites (only the 23 lower-impact files)
- Top 4 unique type strings account for 86% of findings (4-6 aliases
eliminate the bulk of the noise).
Not blocked by anything; can be executed independently of the other
pending tracks. Blocks typed_dict_migration_20260606 (the future Phase 2).
AST-based static analyzer that identifies type signatures that reduce
code clarity and AI-readability. Targets:
- Dict[str, Any] / dict[str, Any] (302 findings)
- list[dict[...]] (115 findings)
- Optional[dict[...]] / Optional[tuple[...]] (11 findings)
- Tuple[...]/tuple[...] as anonymous structs (4 findings)
- Return tuples and assign tuples (4 findings)
The script also counts POSITIVE patterns (TypeAlias, NamedTuple,
@dataclass, pydantic.BaseModel) that already exist in the codebase.
Current count: 0. The codebase has zero strong type aliases.
Usage: python scripts/audit_weak_types.py [--json] [--top N] [--verbose]
Exits 0 (informational); exits 1 only on usage error.
Initial run on src/ found 430 weak sites across 29 files. The 4 most
common unique type strings (list[dict[str, Any]], dict[str, Any],
Dict[str, Any], List[Dict[str, Any]]) account for 86% of findings.
A focused track adding 4-6 type aliases would eliminate the vast
majority of the noise.
Output modes:
- human-readable (default): top N files with category breakdowns
- JSON (--json): machine-readable for tooling
- verbose (--verbose): every finding inline
Exit codes:
- 0: audit ran successfully (regardless of findings)
- 1: usage error (bad args, source dir not found)
Phase 5D of startup_speedup_20260606 track.
DEAD IMPORTS REMOVED (zero uses, safe to remove):
- 'import tomli_w' (line 18) - never referenced anywhere in gui_2.py
- 'from src import theme_nerv_fx as theme_fx' (line 59) - never
referenced; the actual NERV FX objects are created in src/theme_2.py
and accessed via render_post_fx()
The theme_nerv_fx removal saves the full ~254ms import of
src.theme_nerv_fx on the main thread.
LAZY PROXY PATTERN for heavy feature-gated modules:
- 'import numpy as np' (line 9) - used in 1 place (plot_lines)
- 'from tkinter import filedialog, Tk' (lines 30, 34) - duplicates
removed, 13 use sites now go through the proxy
Added a _LazyModule class that defers module loading until first
attribute access or call. The proxy is a transparent replacement:
'np.array(...)' and 'Tk()' continue to work unchanged. The import
only fires on first use, then is cached in sys.modules for O(1)
subsequent access.
ARCHITECTURAL NOTE: This is a general-purpose pattern that can be
used for any module that should not be in the main thread's import
chain. The Phase 5A 'lazy registry proxy' was a similar idea but
custom-tailored to one use case; _LazyModule is the general form.
EFFECTIVENESS (estimated from baseline):
- src.theme_nerv_fx removal: ~254ms saved
- numpy deferral: ~65ms saved (when not plotting); 0ms saved if the
user is using numpy (imgui_bundle transitively brings it in anyway)
- tkinter deferral: small but real savings (tkinter is stdlib but
still has import cost)
Note that numpy and tkinter are still brought in transitively by
imgui_bundle and other src.* modules. The test verifies the AST
(top-level imports of gui_2.py) is clean; the runtime sys.modules
check is too strict because of these transitive imports.
TESTS:
- tests/test_gui_2_no_top_level_heavy_imports.py: 5/5 PASS (all RED -> GREEN)
- 13 gui tests sampled (gui_progress, gui_paths, gui_kill_button,
gui_window_controls, gui_custom_window, gui_fast_render,
gui_startup_smoke, gui2_layout, gui2_events): all PASS
NEXT: Phase 6 (ad-hoc threads -> _io_pool), Phase 7 (warmup
notification), Phase 8 (enforcement), Phase 9 (final verify + checkpoint).
Phase 5C of startup_speedup_20260606 track.
src/markdown_helper.py imported src.markdown_table at module level:
from src.markdown_table import parse_tables, render_table
Both parse_tables and render_table are only used inside
MarkdownRenderer.render(). Removed the top-level import; the
MarkdownRenderer.render() method now does:
markdown_table = _require_warmed('src.markdown_table')
parse_tables = markdown_table.parse_tables
render_table = markdown_table.render_table
at the top of its body, before any other logic.
TESTS:
- tests/test_markdown_helper_no_top_level_table.py: 3/3 PASS (all RED -> GREEN)
- tests/test_markdown_table*.py (5 files) + test_markdown_helper_bullets.py +
test_markdown_render_robust.py: 24/24 PASS (no breakage)
EFFECTIVENESS: import src.markdown_helper no longer triggers src.markdown_table
(~250ms). For renderers that never hit a GFM table, the import is never
paid. For renderers that do, the warmup pre-loads it on _io_pool and the
render() lookup is O(1).
NEXT: Phase 5D - bulk refactor of src/gui_2.py feature-gated imports via
scripts/audit_gui2_imports.py.
Track + metadata + state + tracks.md registration for the Fleury-pattern
error handling refactor.
Key design decisions (per user approval):
- Option A for _send_<vendor>() handling: rename to _send_<vendor>_result()
and change return type to Result[str] (contained to internal callers).
- send() is marked @typing_extensions.deprecated; send_result() is the new
public API.
- ProviderError exception is FULLY REPLACED by ErrorInfo dataclass
(a value, not an exception).
- 5 phases: foundation, mcp_client, ai_client, rag_engine, deprecation+archive.
- Post-tracks baseline check (Phase 1 Task 1.1) verifies the 3 pending
tracks have merged before proceeding.
- 9 Open Questions, 7 Risks, 5 verification criteria, follow-up track
public_api_migration_20260606 planned in spec §12.1.
Blocked by: startup_speedup_20260606, test_batching_refactor_20260606,
qwen_llama_grok_integration_20260606. Blocks: public_api_migration_20260606.
Phase 5B of startup_speedup_20260606 track.
src/theme_2.py had 3 top-level NERV imports:
from src import theme_nerv
from src.theme_nerv import DATA_GREEN
from src.theme_nerv_fx import CRTFilter, AlertPulsing, StatusFlicker
And 3 module-level FX object instantiations:
_crt_filter = CRTFilter()
_alert_pulsing = AlertPulsing()
_status_flicker = StatusFlicker()
ALL removed. The 3 use sites now lookup via _require_warmed:
- apply() NERV branch: theme_nerv = _require_warmed('src.theme_nerv')
- ai_text_color(): theme_nerv = _require_warmed('src.theme_nerv')
(then uses theme_nerv.DATA_GREEN)
- render_post_fx(): theme_nerv_fx = _require_warmed('src.theme_nerv_fx')
(then creates FX objects locally per-call)
The _status_flicker was instantiated but never used (dead code path;
the StatusFlicker class is still importable via theme_nerv_fx but not
auto-constructed in theme_2.py).
TESTS:
- tests/test_theme_2_no_top_level_nerv.py: 4/4 PASS (all RED -> GREEN)
- tests/test_theme.py, test_theme_nerv.py, test_theme_nerv_fx.py,
test_theme_models.py: 21/21 PASS (no breakage)
EFFECTIVENESS: import src.theme_2 no longer triggers src.theme_nerv or
src.theme_nerv_fx (~485ms combined). For users on default theme, these
are NEVER loaded. For NERV users, the warmup pre-loads on _io_pool and
the lookup is O(1).
NEXT: Phase 5C (markdown table) follows same TDD pattern.
This track executes after startup_speedup, test_batching_refactor, and
qwen_llama_grok_integration land. Section 10 documents the expected
post-tracks codebase state and answers 6 critical coordination questions:
- Q1: Existing _send_<vendor>() functions (returning str) are renamed
to _send_<vendor>_result() and changed to return Result[str] (Option A:
clean rename, contained to internal callers).
- Q2: send_openai_compatible in src/openai_compatible.py STAYS as-is
(it raises at the SDK boundary; correct per Fleury). The new
_send_<vendor>_result() functions catch and convert to ErrorInfo.
- Q3: Deprecation warning on send() will produce Python warnings in
tests; filterwarnings in conftest.py silences them during transition.
- Q4: The except ProviderError clauses in src/ai_client.py become
dead code after the refactor and are removed in Phase 3.
- Q5: ProviderError is FULLY REPLACED by ErrorInfo (a value, not an
exception). ProviderError removed entirely; ErrorInfo is the new
error type.
- Q6: ProviderError.ui_message() moves to ErrorInfo.ui_message().
Phase 1 also adds a baseline verification task to confirm the 3 pending
tracks have merged before proceeding.
Also renumbered Out of Scope (11) and See Also (12) sections to
preserve monotonic section numbers.
Phase 5A T5A.1-T5A.4 of startup_speedup_20260606 track.
src/commands.py was importing src.command_palette at module load to
create the CommandRegistry singleton. The 32 @registry.register
decorators on the command functions needed this registry at import time.
Approach: lazy registry proxy. The @registry.register decorator now
just queues the function in a list; the real CommandRegistry is built
on first access to any other registry attribute (.all, .get, etc.).
By that time, all 32 decorators have run and the pending list is
populated, so the real registration is complete in one pass.
src/commands.py changes:
- Removed 'from src.command_palette import CommandRegistry'
- Added 'from src.module_loader import _require_warmed'
- Added _LazyCommandRegistry class (proxy)
- Added _get_real_registry() function (initializes on first access)
- Replaced 'registry = CommandRegistry()' with 'registry = _LazyCommandRegistry()'
- The 32 @registry.register decorators are unchanged (the proxy's
register method returns the function unchanged after queueing it)
EFFECTIVENESS:
- 'import src.commands' no longer triggers src.command_palette (~244ms)
- The warmup on AppController's _io_pool pre-loads src.command_palette
on a background thread during startup
- First access to registry.all() (e.g. from gui_2.py at palette open
time) is O(1) - the warmup module is already in sys.modules
TESTS:
- tests/test_commands_no_top_level_command_palette.py: 4/4 PASS (3 RED, 1 green; now all green)
- tests/test_command_palette.py: 13/13 PASS (no breakage)
- tests/test_command_palette_sim.py: 7/7 PASS (live_gui tests, the
full palette flow works end-to-end with the lazy proxy)
ARCHITECTURAL NOTE: The lazy proxy is a minimal-change solution that
preserves the public API. The 32 decorated functions don't need any
changes; gui_2.py's 'from src.commands import registry' still works
unchanged. The deferral is invisible to consumers.
NEXT: Phase 5B (NERV theme) and 5C (markdown table) follow the same
TDD pattern. 5D is the bulk refactor of src/gui_2.py feature-gated
imports via the audit_gui2_imports.py script.
ed
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