archived didn't delete from tracks...

conductor/tracks.md

@@ -10,29 +10,25 @@ This file tracks all major tracks for the project. Each track has its own detail
 
 ### Architecture & Backend
 
-1. [x] **Track: External MCP Server Support**
-   *Link: [./tracks/external_mcp_support_20260308/](./tracks/external_mcp_support_20260308/)*
-   *Goal: Add support for external MCP servers (Local Stdio and Remote SSE/WS) with flexible configuration and lifecycle management (including auto-start on project load).*
-
-2. [ ] **Track: RAG Support**
+1. [ ] **Track: RAG Support**
    *Link: [./tracks/rag_support_20260308/](./tracks/rag_support_20260308/)*
    *Goal: Add support for RAG (Retrieval-Augmented Generation) using local vector stores (Chroma/Qdrant), native vendor retrieval, and external RAG APIs. Implement indexing pipeline and retrieval UI.*
 
-3. [x] **Track: Agent Tool Preference & Bias Tuning**
+2. [x] **Track: Agent Tool Preference & Bias Tuning**
    *Link: [./tracks/tool_bias_tuning_20260308/](./tracks/tool_bias_tuning_20260308/)*
    *Goal: Influence agent tool selection via a weighting system. Implement semantic nudges in tool descriptions and a dynamic "Tooling Strategy" section in the system prompt. Includes GUI badges and sliders for weight adjustment.*
 
-4. [x] **Track: Expanded Hook API & Headless Orchestration**
+3. [x] **Track: Expanded Hook API & Headless Orchestration**
    *Link: [./tracks/hook_api_expansion_20260308/](./tracks/hook_api_expansion_20260308/)*
    *Goal: Maximize internal state exposure and provide comprehensive control endpoints (worker spawn/kill, pipeline pause/resume, DAG mutation) via the Hook API. Implement WebSocket-based real-time event streaming.*
 
-5. [ ] **Track: Codebase Audit and Cleanup**
+4. [ ] **Track: Codebase Audit and Cleanup**
     *Link: [./tracks/codebase_audit_20260308/](./tracks/codebase_audit_20260308/)*
 
-6. [ ] **Track: Expanded Test Coverage and Stress Testing**
+5. [ ] **Track: Expanded Test Coverage and Stress Testing**
    *Link: [./tracks/test_coverage_expansion_20260309/](./tracks/test_coverage_expansion_20260309/)*
 
-7. [ ] **Track: Beads Mode Integration**
+6. [ ] **Track: Beads Mode Integration**
    *Link: [./tracks/beads_mode_20260309/](./tracks/beads_mode_20260309/)*
    *Goal: Integrate Beads (git-backed graph issue tracker) as an alternative backend for MMA implementation tracks and tickets.*
 
@@ -103,18 +99,6 @@ This file tracks all major tracks for the project. Each track has its own detail
 
 ---
 
-### Path Configuration
-
-1. [x] **Track: Project-Specific Conductor Directory**
-   *Link: [./tracks/project_conductor_dir_20260308/](./tracks/project_conductor_dir_20260308/)*
-   *Goal: Make conductor directory per-project. Each project TOML can specify custom conductor dir for isolated track/state management.*
-
-2. [x] **Track: GUI Path Configuration in Context Hub**
-   *Link: [./tracks/gui_path_config_20260308/](./tracks/gui_path_config_20260308/)*
-   *Goal: Add path configuration UI to Context Hub. Allow users to view and edit configurable paths directly from the GUI.*
-
----
-
 ### Manual UX Controls
 
 1. [x] **Track: Saved System Prompt Presets**
@@ -168,6 +152,9 @@ This file tracks all major tracks for the project. Each track has its own detail
 
 ### Completed / Archived
 
+- [x] **Track: External MCP Server Support** (Archived 2026-03-12)
+- [x] **Track: Project-Specific Conductor Directory** (Archived 2026-03-12)
+- [x] **Track: GUI Path Configuration in Context Hub** (Archived 2026-03-12)
 - [x] **Track: True Parallel Worker Execution (The DAG Realization)**
 - [x] **Track: Deep AST-Driven Context Pruning (RAG for Code)**
 - [x] **Track: Visual DAG & Interactive Ticket Editing**

src/models.py

@@ -48,6 +48,13 @@ from src.paths import get_config_path
 
 CONFIG_PATH = get_config_path()
 
+def _clean_nones(data: Any) -> Any:
+ if isinstance(data, dict):
+  return {k: _clean_nones(v) for k, v in data.items() if v is not None}
+ elif isinstance(data, list):
+  return [_clean_nones(v) for v in data if v is not None]
+ return data
+
 def load_config() -> dict[str, Any]:
  with open(CONFIG_PATH, "rb") as f:
   return tomllib.load(f)
@@ -55,6 +62,7 @@ def load_config() -> dict[str, Any]:
 def save_config(config: dict[str, Any]) -> None:
  import tomli_w
  import sys
+ config = _clean_nones(config)
  sys.stderr.write(f"[DEBUG] Saving config. Theme: {config.get('theme')}\n")
  sys.stderr.flush()
  with open(CONFIG_PATH, "wb") as f:

tests/conftest.py

@@ -200,7 +200,7 @@ def live_gui() -> Generator[tuple[subprocess.Popen, str], None, None]:
  temp_workspace.mkdir(parents=True, exist_ok=True)
  
  # Create minimal project files to avoid cluttering root
- (temp_workspace / "manual_slop.toml").write_text("[project]\nname = 'TestProject'\n", encoding="utf-8")
+ (temp_workspace / "manual_slop.toml").write_text("[project]\nname = 'TestProject'\n\n[conductor]\ndir = 'conductor'\n", encoding="utf-8")
  (temp_workspace / "conductor" / "tracks").mkdir(parents=True, exist_ok=True)
  
  # Create a local config.toml in temp_workspace
@@ -209,6 +209,10 @@ def live_gui() -> Generator[tuple[subprocess.Popen, str], None, None]:
   'projects': {
    'paths': [str((temp_workspace / 'manual_slop.toml').absolute())],
    'active': str((temp_workspace / 'manual_slop.toml').absolute())
+  },
+  'paths': {
+   'logs_dir': str((temp_workspace / "logs").absolute()),
+   'scripts_dir': str((temp_workspace / "scripts" / "generated").absolute())
   }
  }
  import tomli_w