docs(readme): update ASCII file tree visualizations to match current state
docs/Readme.md: was showing 5 guides (architecture, tools, mma, simulations, meta_boundary); now shows all 14 current guides plus MMA_Support/, reports/, superpowers/. Also expanded src/ tree from 22 modules to 53 modules, added simulation/ sim_* files, tests/ test infrastructure, scripts/ audit + docker scripts, and corrected entry-point paths (sloppy.py, manual_slop.toml). Readme.md: 'Module by Domain' table was showing 22 src/ modules; now shows all 53 current modules. Updated MCP tool count from 26 to 45. Added all modules added since 2026-02 doc refresh: rag_engine, beads_client, hot_reloader, personas, presets, context_presets, tool_presets, tool_bias, command_palette, commands, workspace_manager, theme_2, theme_nerv, theme_nerv_fx, fuzzy_anchor, history, imgui_scopes, summary_cache, markdown_helper, patch_modal, diff_viewer, external_editor, orchestrator_pm, synthesis_formatter, thinking_parser.
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@@ -321,62 +321,104 @@ manual_slop/
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│ ├── product.md # Product definition
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│ ├── product-guidelines.md
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│ ├── tech-stack.md
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│ └── workflow.md
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├── docs/ # Deep-dive documentation
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│ ├── workflow.md
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│ ├── index.md
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│ └── edit_workflow.md
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├── docs/ # Deep-dive documentation (14 guides + specs/plans)
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│ ├── guide_architecture.md
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│ ├── guide_meta_boundary.md
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│ ├── guide_tools.md
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│ ├── guide_mma.md
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│ ├── guide_simulations.md
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│ └── guide_tools.md
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├── logs/ # Runtime logs
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│ ├── sessions/ # Session logs
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│ │ └── <session_id>/ # Per-session files
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│ │ ├── comms.log
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│ │ ├── toolcalls.log
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│ │ ├── apihooks.log
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│ │ └── clicalls.log
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│ ├── agents/ # Sub-agent logs
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│ ├── errors/ # Error logs
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│ └── test/ # Test logs
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├── scripts/ # Utility scripts
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│ ├── generated/ # AI-generated scripts
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│ └── *.py # Build/execution scripts
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├── src/ # Core implementation
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│ ├── guide_context_curation.md
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│ ├── guide_shaders_and_window.md
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│ ├── guide_rag.md
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│ ├── guide_beads.md
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│ ├── guide_hot_reload.md
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│ ├── guide_personas.md
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│ ├── guide_nerv_theme.md
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│ ├── guide_workspace_profiles.md
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│ ├── guide_command_palette.md
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│ ├── guide_testing.md
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│ ├── guide_meta_boundary.md
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│ ├── Readme.md
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│ ├── MMA_Support/ # Legacy MMA reference (deprecated)
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│ ├── reports/ # Phase 5 reports
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│ └── superpowers/ # Specs and plans for design work
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├── src/ # Core implementation (53 modules)
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│ ├── gui_2.py # Primary ImGui interface
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│ ├── app_controller.py # Headless controller
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│ ├── ai_client.py # Multi-provider LLM abstraction
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│ ├── mcp_client.py # 26 MCP tools
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│ ├── api_hooks.py # HookServer REST API
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│ ├── api_hook_client.py # Hook API client
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│ ├── ai_client.py # Multi-provider LLM (Gemini, Anthropic, DeepSeek, MiniMax)
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│ ├── mcp_client.py # 45 MCP tools with 3-layer security
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│ ├── api_hooks.py # HookServer REST API on :8999
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│ ├── api_hook_client.py # Python client for the Hook API
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│ ├── multi_agent_conductor.py # ConductorEngine
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│ ├── conductor_tech_lead.py # Tier 2 ticket generation
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│ ├── dag_engine.py # TrackDAG + ExecutionEngine
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│ ├── models.py # Ticket, Track, WorkerContext
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│ ├── models.py # Ticket, Track, WorkerContext, etc.
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│ ├── events.py # EventEmitter, SyncEventQueue
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│ ├── project_manager.py # TOML persistence
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│ ├── session_logger.py # JSON-L logging
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│ ├── project_manager.py # TOML persistence, discussion management
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│ ├── session_logger.py # JSON-L + markdown audit trails
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│ ├── rag_engine.py # RAG (ChromaDB + embedding providers)
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│ ├── beads_client.py # Beads/Dolt issue tracking client
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│ ├── hot_reloader.py # State-preserving module reloader
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│ ├── personas.py # Unified agent profile manager
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│ ├── presets.py # System prompt preset manager
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│ ├── context_presets.py # Context composition preset manager
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│ ├── tool_presets.py # Tool preset manager
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│ ├── tool_bias.py # Tool bias engine
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│ ├── command_palette.py # Command palette + fuzzy matcher
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│ ├── commands.py # 32 registered commands
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│ ├── workspace_manager.py # Workspace profile save/load
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│ ├── theme_2.py # Theme system (palette/font/etc.)
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│ ├── theme_nerv.py # NERV Tactical Console theme
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│ ├── theme_nerv_fx.py # NERV FX (scanlines, flicker, alert)
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│ ├── shell_runner.py # PowerShell execution
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│ ├── file_cache.py # ASTParser (tree-sitter)
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│ ├── summarize.py # Heuristic summaries
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│ ├── outline_tool.py # Code outlining
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│ ├── summarize.py # Heuristic file summaries
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│ ├── outline_tool.py # Hierarchical code outline
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│ ├── fuzzy_anchor.py # Fuzzy anchor slice algorithm
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│ ├── history.py # Undo/redo HistoryManager
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│ ├── imgui_scopes.py # ImGui context managers
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│ ├── performance_monitor.py # FPS/CPU tracking
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│ ├── log_registry.py # Session metadata
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│ ├── log_pruner.py # Log cleanup
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│ ├── paths.py # Path resolution
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│ ├── log_pruner.py # Automated log cleanup
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│ ├── paths.py # Centralized path resolution
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│ ├── cost_tracker.py # Token cost estimation
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│ ├── gemini_cli_adapter.py # CLI subprocess adapter
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│ ├── mma_prompts.py # Tier system prompts
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│ └── theme*.py # UI theming
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│ ├── mma_prompts.py # Tier-specific system prompts
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│ ├── summary_cache.py # SHA256-keyed summary LRU cache
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│ ├── markdown_helper.py # Markdown rendering helpers
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│ ├── patch_modal.py # Patch approval modal
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│ ├── diff_viewer.py # Diff rendering
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│ ├── external_editor.py # External editor integration
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│ ├── orchestrator_pm.py # Orchestrator project manager
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│ ├── conductor_tech_lead.py # Tier 2 ticket generation
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│ ├── synthesis_formatter.py # Multi-take synthesis
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│ ├── thinking_parser.py # AI thinking-trace extraction
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│ └── __init__.py
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├── simulation/ # Test simulations
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│ ├── sim_base.py # BaseSimulation class
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│ ├── workflow_sim.py # WorkflowSimulator
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│ ├── user_agent.py # UserSimAgent
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│ └── sim_*.py # Specific simulations
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├── tests/ # Test suite
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│ ├── conftest.py # Fixtures (live_gui)
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│ ├── artifacts/ # Test outputs
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│ └── test_*.py # Test files
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│ ├── sim_context.py # ContextSimulation
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│ ├── sim_execution.py # ExecutionSimulation
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│ ├── sim_ai_settings.py # AISettingsSimulation
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│ └── sim_tools.py # ToolsSimulation
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├── tests/ # Test suite (251 files)
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│ ├── conftest.py # Fixtures (live_gui, isolate_workspace, etc.)
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│ ├── mock_gemini_cli.py # Mock provider for integration tests
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│ ├── test_*.py # Unit tests
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│ ├── *_sim.py # Integration tests using live_gui
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│ ├── test_clean_install.py # Opt-in: clones repo and verifies hooks
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│ ├── test_docker_build.py # Opt-in: builds Docker image
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│ ├── artifacts/ # Git-ignored; test outputs
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│ └── logs/ # Git-ignored; live_gui log files
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├── scripts/ # Utility scripts
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│ ├── generated/ # AI-generated scripts
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│ ├── check_test_toml_paths.py # Audit script (CI gate)
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│ ├── docker_build.sh
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│ └── docker_run.sh
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├── sloppy.py # Main entry point
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├── config.toml # Global configuration
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└── credentials.toml # API keys
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├── manual_slop.toml # Active project config (current)
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└── credentials.toml # API keys (gitignored)
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```
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