chore(cleanup): Remove unused scripts and artifacts from project root
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# Implementation Plan: Codebase Migration to `src` & Cleanup (codebase_migration_20260302)
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## Phase 1: Unused File Identification & Removal
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- [ ] Task: Initialize MMA Environment `activate_skill mma-orchestrator`
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- [ ] Task: Audit Codebase for Dead Files
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- [ ] WHERE: Project root
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- [ ] WHAT: Run `py_find_usages` or grep on suspected unused files to verify they are not referenced by `gui_2.py`, `tests/`, `simulation/`, or core config files.
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- [ ] HOW: Gather a list of unused files.
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- [ ] SAFETY: Do not delete files referenced in `.toml` files or Github action workflows.
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- [ ] Task: Delete Unused Files
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- [ ] WHERE: Project root
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- [ ] WHAT: Use `run_powershell` with `Remove-Item` to delete the identified unused files.
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- [ ] HOW: Explicitly list and delete them.
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- [ ] SAFETY: Stage deletions to Git carefully.
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- [x] Task: Initialize MMA Environment `activate_skill mma-orchestrator`
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- [x] Task: Audit Codebase for Dead Files
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- [x] Task: Delete Unused Files
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- [ ] Task: Conductor - User Manual Verification 'Phase 1: Unused File Identification & Removal' (Protocol in workflow.md)
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## Phase 2: Directory Restructuring & Migration
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