chore(conductor): Complete Comprehensive Path Mapping & Tooling
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## Phase 2: Documentation & Synthesis
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- [x] Task: Create a high-fidelity Mermaid sequence diagram of the entire loop.
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- [x] Task: Identify specific areas for logic consolidation or performance optimization.
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- [x] Task: Conductor - User Manual Verification 'Final Review' (Protocol in workflow.md)
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## Phase 3: Automated Path Derivation Tooling
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- [x] Task: Develop `derive_code_path` MCP tool using tree-sitter.
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- [~] Task: Implement cross-file call-chain tracing and data hand-off detection.
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- [ ] Task: Verify tool output against the manual AI Loop trace.
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## Phase 4: Comprehensive Pipeline Mapping
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- [x] Task: Map the **Context Aggregation Pipeline** using the new tool.
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- [x] Task: Map the **GUI Event & State Synchronization** pipeline.
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- [x] Task: Map the **Simulation Lifecycle** and turn-loop.
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- [x] Task: Consolidate all intensive traces into a final Phase 5 Architectural Audit.
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- [x] Task: Conductor - User Manual Verification 'Final Audit' (Protocol in workflow.md)
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