conductor(plan): Mark Hub refactoring as complete
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## Phase 3: UI/UX Refinement
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## Phase 3: UI/UX Refinement
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- [ ] **Task:** Refactor UI to a "Hub" based layout.
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- [x] **Task:** Refactor UI to a "Hub" based layout. [ddb53b2]
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- [ ] Sub-task: Analyze the docking layout of `gui.py`.
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- [x] Sub-task: Analyze the docking layout of `gui.py`.
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- [ ] Sub-task: Create wrapper windows for "Context Hub", "AI Settings Hub", "Discussion Hub", and "Operations Hub" in `gui_2.py`.
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- [x] Sub-task: Create wrapper windows for "Context Hub", "AI Settings Hub", "Discussion Hub", and "Operations Hub" in `gui_2.py`.
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- [ ] Sub-task: Move existing windows into their respective Hubs using the `imgui-bundle` docking API.
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- [x] Sub-task: Move existing windows into their respective Hubs using the `imgui-bundle` docking API.
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- [ ] Sub-task: Ensure the default layout is saved to and loaded from `manualslop_layout.ini`.
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- [x] Sub-task: Ensure the default layout is saved to and loaded from `manualslop_layout.ini`.
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- [x] **Task:** Add Agent Capability Toggles to the UI. [merged]
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- [x] **Task:** Add Agent Capability Toggles to the UI. [merged]
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- [x] Sub-task: In the "Projects" or a new "Agent" panel, add checkboxes for each agent tool (e.g., `run_powershell`, `read_file`).
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- [x] Sub-task: In the "Projects" or a new "Agent" panel, add checkboxes for each agent tool (e.g., `run_powershell`, `read_file`).
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- [x] Sub-task: Ensure these UI toggles are saved to the project's `.toml` file.
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- [x] Sub-task: Ensure these UI toggles are saved to the project's `.toml` file.
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- [x] Sub-task: Review all newly added windows and controls.
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- [x] Sub-task: Review all newly added windows and controls.
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- [x] Sub-task: Ensure that colors, fonts, and scaling from `theme_2.py` are correctly applied everywhere.
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- [x] Sub-task: Ensure that colors, fonts, and scaling from `theme_2.py` are correctly applied everywhere.
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- [x] Sub-task: Test theme switching to confirm all elements update correctly.
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- [x] Sub-task: Test theme switching to confirm all elements update correctly.
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- [ ] **Task:** Write tests for UI/UX changes.
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- [x] **Task:** Write tests for UI/UX changes. [ddb53b2]
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- [ ] Sub-task: Create `tests/test_gui2_layout.py` to verify the hub structure is created.
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- [x] Sub-task: Create `tests/test_gui2_layout.py` to verify the hub structure is created.
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- [ ] Sub-task: Add tests to verify agent capability toggles are respected.
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- [x] Sub-task: Add tests to verify agent capability toggles are respected.
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- [ ] **Task:** Conductor - User Manual Verification 'UI/UX Refinement' (Protocol in workflow.md)
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- [ ] **Task:** Conductor - User Manual Verification 'UI/UX Refinement' (Protocol in workflow.md)
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## Phase 4: Finalization and Verification
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## Phase 4: Finalization and Verification
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